Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJ218_03795 | CJ218_03800 | GCA_001052115_00237 | GCA_001052115_00238 | Unannotated protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | Unannotated protein. | 0.817 |
CJ218_03795 | CJ218_03805 | GCA_001052115_00237 | GCA_001052115_00239 | Unannotated protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | Unannotated protein. | 0.467 |
CJ218_03795 | thiI | GCA_001052115_00237 | GCA_001052115_00240 | Unannotated protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.485 |
CJ218_03795 | trmFO | GCA_001052115_00237 | GCA_001052115_00241 | Unannotated protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | Unannotated protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.436 |
CJ218_03800 | CJ218_03795 | GCA_001052115_00238 | GCA_001052115_00237 | Unannotated protein. | Unannotated protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | 0.817 |
CJ218_03800 | CJ218_03805 | GCA_001052115_00238 | GCA_001052115_00239 | Unannotated protein. | Unannotated protein. | 0.463 |
CJ218_03800 | thiI | GCA_001052115_00238 | GCA_001052115_00240 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.475 |
CJ218_03800 | trmFO | GCA_001052115_00238 | GCA_001052115_00241 | Unannotated protein. | Unannotated protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.439 |
CJ218_03805 | CJ218_03795 | GCA_001052115_00239 | GCA_001052115_00237 | Unannotated protein. | Unannotated protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | 0.467 |
CJ218_03805 | CJ218_03800 | GCA_001052115_00239 | GCA_001052115_00238 | Unannotated protein. | Unannotated protein. | 0.463 |
CJ218_03805 | CJ218_05425 | GCA_001052115_00239 | GCA_001052115_01119 | Unannotated protein. | Unannotated protein. | 0.921 |
CJ218_03805 | codY | GCA_001052115_00239 | GCA_001052115_00242 | Unannotated protein. | Unannotated protein; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | 0.522 |
CJ218_03805 | mnmA | GCA_001052115_00239 | GCA_001052115_01120 | Unannotated protein. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.449 |
CJ218_03805 | thiI | GCA_001052115_00239 | GCA_001052115_00240 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.993 |
CJ218_03805 | trmFO | GCA_001052115_00239 | GCA_001052115_00241 | Unannotated protein. | Unannotated protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.752 |
CJ218_05425 | CJ218_03805 | GCA_001052115_01119 | GCA_001052115_00239 | Unannotated protein. | Unannotated protein. | 0.921 |
CJ218_05425 | mnmA | GCA_001052115_01119 | GCA_001052115_01120 | Unannotated protein. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.868 |
CJ218_05425 | thiI | GCA_001052115_01119 | GCA_001052115_00240 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.966 |
RsmB | guaA | GCA_001052115_00319 | GCA_001052115_01277 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | 0.428 |
RsmB | mnmA | GCA_001052115_00319 | GCA_001052115_01120 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.570 |
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