Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJ218_04040 | CJ218_04320 | GCA_001052115_00286 | GCA_001052115_00342 | Unannotated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Unannotated protein. | 0.535 |
CJ218_04040 | CJ218_06925 | GCA_001052115_00286 | GCA_001052115_00991 | Unannotated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Unannotated protein. | 0.527 |
CJ218_04040 | CJ218_07320 | GCA_001052115_00286 | GCA_001052115_00912 | Unannotated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Unannotated protein. | 0.731 |
CJ218_04300 | CJ218_04320 | GCA_001052115_00338 | GCA_001052115_00342 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein. | 0.756 |
CJ218_04300 | nusB | GCA_001052115_00338 | GCA_001052115_00341 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.809 |
CJ218_04300 | xseA | GCA_001052115_00338 | GCA_001052115_00340 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.904 |
CJ218_04300 | xseB | GCA_001052115_00338 | GCA_001052115_00339 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.888 |
CJ218_04320 | CJ218_04040 | GCA_001052115_00342 | GCA_001052115_00286 | Unannotated protein. | Unannotated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.535 |
CJ218_04320 | CJ218_04300 | GCA_001052115_00342 | GCA_001052115_00338 | Unannotated protein. | Unannotated protein; Belongs to the FPP/GGPP synthase family. | 0.756 |
CJ218_04320 | CJ218_06920 | GCA_001052115_00342 | GCA_001052115_00992 | Unannotated protein. | Unannotated protein. | 0.489 |
CJ218_04320 | CJ218_06925 | GCA_001052115_00342 | GCA_001052115_00991 | Unannotated protein. | Unannotated protein. | 0.563 |
CJ218_04320 | CJ218_07045 | GCA_001052115_00342 | GCA_001052115_00967 | Unannotated protein. | Unannotated protein. | 0.547 |
CJ218_04320 | CJ218_07320 | GCA_001052115_00342 | GCA_001052115_00912 | Unannotated protein. | Unannotated protein. | 0.514 |
CJ218_04320 | codY | GCA_001052115_00342 | GCA_001052115_00242 | Unannotated protein. | Unannotated protein; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | 0.651 |
CJ218_04320 | nusB | GCA_001052115_00342 | GCA_001052115_00341 | Unannotated protein. | Unannotated protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.799 |
CJ218_04320 | xseA | GCA_001052115_00342 | GCA_001052115_00340 | Unannotated protein. | Unannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.756 |
CJ218_04320 | xseB | GCA_001052115_00342 | GCA_001052115_00339 | Unannotated protein. | Unannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.756 |
CJ218_06920 | CJ218_04320 | GCA_001052115_00992 | GCA_001052115_00342 | Unannotated protein. | Unannotated protein. | 0.489 |
CJ218_06920 | CJ218_06925 | GCA_001052115_00992 | GCA_001052115_00991 | Unannotated protein. | Unannotated protein. | 0.975 |
CJ218_06925 | CJ218_04040 | GCA_001052115_00991 | GCA_001052115_00286 | Unannotated protein. | Unannotated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.527 |
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