Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJ218_01750 | DnaE | GCA_001052115_01692 | GCA_001052115_01174 | Unannotated protein. | Unannotated protein. | 0.809 |
CJ218_01750 | Ssb-2 | GCA_001052115_01692 | GCA_001052115_00565 | Unannotated protein. | Unannotated protein. | 0.566 |
CJ218_01750 | dnaB | GCA_001052115_01692 | GCA_001052115_00580 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.685 |
CJ218_01750 | dnaG | GCA_001052115_01692 | GCA_001052115_01685 | Unannotated protein. | Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.546 |
CJ218_06520 | dnaB | GCA_001052115_00578 | GCA_001052115_00580 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.675 |
CJ218_06520 | rplI | GCA_001052115_00578 | GCA_001052115_00579 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Binds to the 23S rRNA. | 0.961 |
CJ218_06520 | sppA | GCA_001052115_00578 | GCA_001052115_00581 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein. | 0.485 |
DnaE | CJ218_01750 | GCA_001052115_01174 | GCA_001052115_01692 | Unannotated protein. | Unannotated protein. | 0.809 |
DnaE | DnaI | GCA_001052115_01174 | GCA_001052115_01787 | Unannotated protein. | Unannotated protein; Belongs to the DnaA family. | 0.432 |
DnaE | Ssb-2 | GCA_001052115_01174 | GCA_001052115_00565 | Unannotated protein. | Unannotated protein. | 0.697 |
DnaE | dnaA | GCA_001052115_01174 | GCA_001052115_01233 | Unannotated protein. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.579 |
DnaE | dnaB | GCA_001052115_01174 | GCA_001052115_00580 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.638 |
DnaE | dnaG | GCA_001052115_01174 | GCA_001052115_01685 | Unannotated protein. | Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.812 |
DnaE | dnaX | GCA_001052115_01174 | GCA_001052115_00348 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.980 |
DnaI | DnaE | GCA_001052115_01787 | GCA_001052115_01174 | Unannotated protein; Belongs to the DnaA family. | Unannotated protein. | 0.432 |
DnaI | dnaA | GCA_001052115_01787 | GCA_001052115_01233 | Unannotated protein; Belongs to the DnaA family. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.599 |
DnaI | dnaB | GCA_001052115_01787 | GCA_001052115_00580 | Unannotated protein; Belongs to the DnaA family. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.740 |
Ssb-2 | CJ218_01750 | GCA_001052115_00565 | GCA_001052115_01692 | Unannotated protein. | Unannotated protein. | 0.566 |
Ssb-2 | DnaE | GCA_001052115_00565 | GCA_001052115_01174 | Unannotated protein. | Unannotated protein. | 0.697 |
Ssb-2 | dnaB | GCA_001052115_00565 | GCA_001052115_00580 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.631 |
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