STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANG86698.1Diaminopimelate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)    
Predicted Functional Partners:
ANG85331.1
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.990
ANG86026.1
Succinyl-diaminopimelate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.981
ANG86689.1
UDP-N-acetylmuramyl peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
ANG85405.1
4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.923
miaB
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
 
   
 0.907
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.895
ANG85427.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.879
ANG86028.1
Succinyldiaminopimelate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.851
ANG86697.1
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.844
hflX
GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
 
   
 0.788
Your Current Organism:
Microbacterium chocolatum
NCBI taxonomy Id: 84292
Other names: BUCSAV 207, CIP 105729, Chromobacterium chocolatum, DSM 12507, IFO 3758, JCM 12412, M. chocolatum, NBRC 3758, NCIB 8181, NCIB:8181, NCIMB 8181, VKM Ac-2078
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