STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN81176.1Outer membrane autotransporter barrel domain protein. (2185 aa)    
Predicted Functional Partners:
ALN79544.1
Hypothetical protein.
  
  
  0.755
ALN83118.1
Putative peptidoglycan binding domain protein.
  
     0.753
ALN78650.1
Hypothetical protein.
  
  
  0.752
ALN81517.1
matE family protein.
  
     0.752
ALN81520.1
Glycosyl transferases group 1 family protein.
  
     0.742
ALN83155.1
Flagellar L-ring family protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
     0.741
ALN82465.1
Hypothetical protein.
  
     0.739
ALN78873.1
Subtilase family protein.
  
     0.736
ALN78792.1
Hypothetical protein.
  
     0.734
ALN79456.1
Putative peptidoglycan binding domain protein.
  
     0.727
Your Current Organism:
Lysobacter antibioticus
NCBI taxonomy Id: 84531
Other names: ATCC 29479, DSM 2044, L. antibioticus, LMG 8760, LMG:8760, Lysobacter sp. DWu169, Lysobacter sp. DWu175, UASM 3C
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