STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN82119.1Hypothetical protein. (771 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 0.869
ALN79565.1
peptidyl-Asp metalloendopeptidase domain protein.
  
     0.752
ALN82694.1
DNA/RNA non-specific endonuclease family protein.
  
     0.742
ALN82120.1
Nitroreductase family protein.
       0.737
ALN81520.1
Glycosyl transferases group 1 family protein.
  
     0.699
ALN78650.1
Hypothetical protein.
  
     0.696
ALN82827.1
Hypothetical protein.
  
     0.692
ALN78873.1
Subtilase family protein.
  
     0.691
ALN80597.1
Hypothetical protein.
  
     0.688
ALN81666.1
Methyltransferase domain protein.
  
     0.684
Your Current Organism:
Lysobacter antibioticus
NCBI taxonomy Id: 84531
Other names: ATCC 29479, DSM 2044, L. antibioticus, LMG 8760, LMG:8760, Lysobacter sp. DWu169, Lysobacter sp. DWu175, UASM 3C
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