STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0410Possible effux transporter. (420 aa)    
Predicted Functional Partners:
SYNW0411
Putative multidrug efflux ABC transporter.
 
 
 0.955
SYNW0408
Conserved hypothetical protein.
 
     0.902
SYNW0193
Putative multidrug efflux ABC transporter.
 
 
 0.824
SYNW0959
Putative multidrug efflux ABC transporter.
 
 
 0.809
SYNW2187
Putative RND family outer membrane efflux protein.
 
 
 0.779
SYNW0409
Hypothetical.
       0.773
swmA
SwmA-cell surface protein required for swimming motility; Citation: Brahamsha (1996) Proc. Natl. Acad. Sci. USA 93:6504-6509.
  
  
 0.636
expE1
Putative secreted calcium-binding protein.
  
  
 0.627
SYNW0192
Conserved hypothetical protein.
 
     0.620
SYNW0332
Conserved hypothetical protein.
  
     0.614
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.