STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0959Putative multidrug efflux ABC transporter. (1007 aa)    
Predicted Functional Partners:
SYNW0958
Similar to leukotoxin secretion protein.
 
 
 0.961
SYNW0960
Conserved hypothetical protein.
 
     0.875
SYNW0410
Possible effux transporter.
 
 
 0.809
SYNW0194
Possible similar to leukotoxin secretion protein.
 
 
 0.779
SYNW0192
Conserved hypothetical protein.
 
     0.752
SYNW0408
Conserved hypothetical protein.
 
     0.739
swmA
SwmA-cell surface protein required for swimming motility; Citation: Brahamsha (1996) Proc. Natl. Acad. Sci. USA 93:6504-6509.
 
  
 0.678
ruvC
Holliday junction resolvase RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
     
 0.630
SYNW0217
ABC transporter, ATP binding component.
 
 
   0.612
expE1
Putative secreted calcium-binding protein.
 
    0.569
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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