STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB,Putative D-Ala-D-Ala carboxypeptidase 3 family (S13). (438 aa)    
Predicted Functional Partners:
SYNW1251
Conserved hypothetical protein.
       0.815
SYNW1848
Conserved hypothetical protein.
 
  
 0.657
SYNW1252
Conserved hypothetical protein.
       0.646
SYNW0792
Uncharacterized protein family UPF0094.
 
  
 0.645
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
     0.634
nifS
Possible cysteine desulfurase (class-V aminotransferase family).
       0.578
SYNW0853
Conserved hypothetical protein; Possible cyclic nucleotide-binding domain.
 
  
 0.555
SYNW0999
Conserved hypothetical protein.
     
 0.539
SYNW1506
Hypothetical.
     
  0.499
SYNW0746
Putative phosphoglycerate mutase family protein.
 
   
 0.437
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.