STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1510Conserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
SYNW1511
Conserved hypothetical.
       0.784
SYNW1512
Conserved hypothetical.
       0.757
SYNW1513
Conserved hypothetical protein; Predicted membrane protein.
       0.757
SYNW2417
Conserved hypothetical protein; Predicted membrane protein.
   
    0.751
SYNW1509
Possible type II alternative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.605
SYNW1508
Conserved hypothetical protein; Predicted membrane protein.
 
     0.495
SYNW0707
Conserved hypothetical protein.
  
     0.418
SYNW1535
Conserved hypothetical protein.
  
     0.411
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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