STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilT2AHomologous to N-terminus of PilT2 protein. (212 aa)    
Predicted Functional Partners:
pilT2B
Homologous to C-terminus of pilT2 protein.
     0.991
pilC
Pili biogenesis protein.
 
  
 0.870
SYNW0787
Putative type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.793
SYNW1827
Putative Na+/H+ antiporter, CPA1 family.
       0.547
SYNW1828
Conserved hypothetical protein.
       0.547
SYNW1829
Conserved hypothetical protein.
       0.547
nfrC
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.547
gspE1,pilB1
Homologous to N-terminus of pilT1 protein; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.993) with cleavage site probability 0.720 at residue 32.
  
0.447
SYNW0311
Conserved hypothetical protein.
     
 0.441
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.