STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1979Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
SYNW1027
Conserved hypothetical protein; STAS domain; Belongs to the anti-sigma-factor antagonist family.
  
    0.711
apcE
Anchor polypeptide LCM; Belongs to the phycobilisome linker protein family.
  
     0.702
SYNW1477
Conserved hypothetical protein.
  
     0.701
SYNW1367
Carotenoid binding protein; Kerfeld et al., Structure (Camb) 2003 11(1), 55-65; Belongs to the orange carotenoid-binding protein family.
  
   
 0.656
cpcG1
Phycobilisome rod-core linker polypeptide cpcG (L-RC 28.5); Belongs to the phycobilisome linker protein family.
  
  
 0.651
cpcT
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.643
apcD
Allophycocyanin alpha-B chain.
  
     0.638
SYNW0251
Conserved hypothetical protein.
  
     0.629
SYNW0902
Conserved hypothetical protein.
  
     0.627
apcC
Linker polypeptide, allophycocyanin-associated; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
     0.626
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.