SYNW2007 protein (Synechococcus sp. WH 8102)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SYNW2007

Similar to cpeY. (398 aa)

Predicted Functional Partners:

cpeY

0.928

mpeA

0.866

mpeB

0.862

cpeZ

0.855

mpeU

0.841

pebA

0.804

cpeA

0.794

pebB

0.792

cpeC

0.791

cpeB

0.787

Your Current Organism:

Synechococcus sp. WH 8102

NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SYNW2007	cpeA	SYNW2007	SYNW2016	Similar to cpeY.	C-phycoerythrin class I alpha chain.	0.794
SYNW2007	cpeB	SYNW2007	SYNW2017	Similar to cpeY.	C-phycoerythrin class I beta chain.	0.787
SYNW2007	cpeC	SYNW2007	SYNW1999	Similar to cpeY.	Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.	0.791
SYNW2007	cpeY	SYNW2007	SYNW2013	Similar to cpeY.	Putative bilin biosynthesis protein (CpeY).	0.928
SYNW2007	cpeZ	SYNW2007	SYNW2012	Similar to cpeY.	Putative bilin biosynthesis protein cpeZ.	0.855
SYNW2007	mpeA	SYNW2007	SYNW2009	Similar to cpeY.	C-phycoerythrin class II alpha chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.	0.866
SYNW2007	mpeB	SYNW2007	SYNW2008	Similar to cpeY.	C-phycoerythrin class II beta chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.	0.862
SYNW2007	mpeU	SYNW2007	SYNW2011	Similar to cpeY.	Bilin biosynthesis protein MpeU (PBS lyase HEAT-like repeat).	0.841
SYNW2007	pebA	SYNW2007	SYNW2020	Similar to cpeY.	15,16 dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.	0.804
SYNW2007	pebB	SYNW2007	SYNW2021	Similar to cpeY.	Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family.	0.792
cpeA	SYNW2007	SYNW2016	SYNW2007	C-phycoerythrin class I alpha chain.	Similar to cpeY.	0.794
cpeA	cpeB	SYNW2016	SYNW2017	C-phycoerythrin class I alpha chain.	C-phycoerythrin class I beta chain.	0.995
cpeA	cpeC	SYNW2016	SYNW1999	C-phycoerythrin class I alpha chain.	Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.	0.900
cpeA	cpeY	SYNW2016	SYNW2013	C-phycoerythrin class I alpha chain.	Putative bilin biosynthesis protein (CpeY).	0.860
cpeA	cpeZ	SYNW2016	SYNW2012	C-phycoerythrin class I alpha chain.	Putative bilin biosynthesis protein cpeZ.	0.878
cpeA	mpeA	SYNW2016	SYNW2009	C-phycoerythrin class I alpha chain.	C-phycoerythrin class II alpha chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.	0.906
cpeA	mpeB	SYNW2016	SYNW2008	C-phycoerythrin class I alpha chain.	C-phycoerythrin class II beta chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.	0.722
cpeA	mpeU	SYNW2016	SYNW2011	C-phycoerythrin class I alpha chain.	Bilin biosynthesis protein MpeU (PBS lyase HEAT-like repeat).	0.815
cpeA	pebA	SYNW2016	SYNW2020	C-phycoerythrin class I alpha chain.	15,16 dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.	0.889
cpeA	pebB	SYNW2016	SYNW2021	C-phycoerythrin class I alpha chain.	Phycoerythrobilin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; Belongs to the HY2 family.	0.870