STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpeYPutative bilin biosynthesis protein (CpeY). (441 aa)    
Predicted Functional Partners:
cpeZ
Putative bilin biosynthesis protein cpeZ.
 
   
 0.963
cpeT
CpeT homolog; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.940
SYNW2007
Similar to cpeY.
  
  
 
0.928
mpeU
Bilin biosynthesis protein MpeU (PBS lyase HEAT-like repeat).
 
   
 0.920
cpeS
Conserved hypothetical protein CpeS; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.914
cpcS-3
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.910
pebA
15,16 dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.
  
   
 0.888
cpcS
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.883
cpeA
C-phycoerythrin class I alpha chain.
 
   
 0.846
cpeB
C-phycoerythrin class I beta chain.
  
   
 0.812
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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