STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpeAC-phycoerythrin class I alpha chain. (164 aa)    
Predicted Functional Partners:
cpeB
C-phycoerythrin class I beta chain.
 
 
 
 0.995
apcC
Linker polypeptide, allophycocyanin-associated; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.934
apcE
Anchor polypeptide LCM; Belongs to the phycobilisome linker protein family.
  
 
 
 0.933
cpcG1
Phycobilisome rod-core linker polypeptide cpcG (L-RC 28.5); Belongs to the phycobilisome linker protein family.
  
 
 
 0.919
cpeE
Possible phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
 
 
 
 0.919
mpeA
C-phycoerythrin class II alpha chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
  
  
0.906
cpeC
Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
 
 
 
 0.900
cpcS-3
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
   
 0.891
SYNW1996
Possible Phycobilisome polypeptide.
  
 
   0.889
pebA
15,16 dihydrobiliverdin:ferredoxin oxidoreductase; Catalyzes the two-electron reduction of biliverdin IX-alpha at the C15 methine bridge; Belongs to the HY2 family.
 
   
 0.889
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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