STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW2303Conserved hypothetical protein. (2014 aa)    
Predicted Functional Partners:
swmA
SwmA-cell surface protein required for swimming motility; Citation: Brahamsha (1996) Proc. Natl. Acad. Sci. USA 93:6504-6509.
  
     0.738
urtC
Putative membrane protein of ABC transport system; Citation: Valladares et al. (2002) Mol. Microbiol. 43:703-715; Belongs to the binding-protein-dependent transport system permease family.
   
   0.717
SYNW2293
Possible hemolysin-type calcium-binding protei.
 
   
 0.586
SYNW2304
Possible secreted protease.
 
    
0.560
SYNW0889
Conserved hypothetical protein.
  
     0.452
SYNW2390
Putative alkaline phosphatase/5' nucleotidase; Belongs to the 5'-nucleotidase family.
 
     0.435
SYNW1908
Possible Zn-dependent metalloprotease.
  
     0.431
SYNW0430
Conserved hypothetical.
  
     0.424
SYNW2302
Conserved hypothetical protein, possible pseudogene; Greatly truncated relative to orf in MIR9313.
       0.417
rsfA
Putative glycosyltransferase.
  
  
 0.414
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.