STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menA1,4-dihydroxy-2-naphthoate (DHNA) octaprenyltransferase; Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 2-carboxy-1,4- naphthoquinone; Belongs to the MenA family. Type 2 subfamily. (310 aa)    
Predicted Functional Partners:
SYNW2165
Putative NADH dehydrogenase, transport associated.
  
 
  0.904
menC
Putative O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.871
menE
Probable O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase).
 
   
 0.865
sds
Polyprenyl synthetase; solanesyl diphosphate synthase (sds); Belongs to the FPP/GGPP synthase family.
 
  
 0.854
chlP
Geranylgeranyl hydrogenase.
    
 0.806
menF
Isochorismate synthase.
 
   
 0.774
SYNW2510
Conserved hypothetical protein; Predicted membrane protein.
  
     0.713
menD
Menaquinone biosynthesis protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).
 
   
 0.684
SYNW1840
Conserved hypothetical protein.
  
     0.682
SYNW0510
Conserved hypothetical protein; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family.
  
     0.659
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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