Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SYNW0590 | SYNW1223 | SYNW0590 | SYNW1223 | Possible succinate dehydrogenase iron-sulfur protein. | Conserved hypothetical protein. | 0.977 |
SYNW0590 | acnB | SYNW0590 | SYNW2500 | Possible succinate dehydrogenase iron-sulfur protein. | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | 0.536 |
SYNW0590 | gltA | SYNW0590 | SYNW2275 | Possible succinate dehydrogenase iron-sulfur protein. | Citrate synthase; Belongs to the citrate synthase family. | 0.881 |
SYNW0590 | icd | SYNW0590 | SYNW0166 | Possible succinate dehydrogenase iron-sulfur protein. | Isocitrate dehydrogenase. | 0.776 |
SYNW0590 | sdhA | SYNW0590 | SYNW0591 | Possible succinate dehydrogenase iron-sulfur protein. | Putative succinate dehydrogenase flavoprotein subunit. | 0.999 |
SYNW1223 | SYNW0590 | SYNW1223 | SYNW0590 | Conserved hypothetical protein. | Possible succinate dehydrogenase iron-sulfur protein. | 0.977 |
SYNW1223 | acnB | SYNW1223 | SYNW2500 | Conserved hypothetical protein. | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | 0.401 |
SYNW1223 | gltA | SYNW1223 | SYNW2275 | Conserved hypothetical protein. | Citrate synthase; Belongs to the citrate synthase family. | 0.743 |
SYNW1223 | icd | SYNW1223 | SYNW0166 | Conserved hypothetical protein. | Isocitrate dehydrogenase. | 0.497 |
SYNW2501 | SYNW2502 | SYNW2501 | SYNW2502 | Putative chloride channel. | Conserved hypothetical protein. | 0.630 |
SYNW2501 | acnB | SYNW2501 | SYNW2500 | Putative chloride channel. | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | 0.816 |
SYNW2501 | aroF | SYNW2501 | SYNW2499 | Putative chloride channel. | DAHP synthetase class I; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). | 0.667 |
SYNW2501 | purB | SYNW2501 | SYNW0405 | Putative chloride channel. | Fumarate lyase:Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.490 |
SYNW2502 | SYNW2501 | SYNW2502 | SYNW2501 | Conserved hypothetical protein. | Putative chloride channel. | 0.630 |
SYNW2502 | acnB | SYNW2502 | SYNW2500 | Conserved hypothetical protein. | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | 0.572 |
SYNW2502 | aroF | SYNW2502 | SYNW2499 | Conserved hypothetical protein. | DAHP synthetase class I; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). | 0.416 |
acnB | SYNW0590 | SYNW2500 | SYNW0590 | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | Possible succinate dehydrogenase iron-sulfur protein. | 0.536 |
acnB | SYNW1223 | SYNW2500 | SYNW1223 | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | Conserved hypothetical protein. | 0.401 |
acnB | SYNW2501 | SYNW2500 | SYNW2501 | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | Putative chloride channel. | 0.816 |
acnB | SYNW2502 | SYNW2500 | SYNW2502 | Aconitate hydratase B; Belongs to the aconitase/IPM isomerase family. | Conserved hypothetical protein. | 0.572 |
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