STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_035664E3 ubiquitin ISG15 ligase TRIM25-like protein. (411 aa)    
Predicted Functional Partners:
ROHU_031839
Putative ATP-dependent RNA helicase DDX58.
    
  0.847
ROHU_029287
Putative ATP-dependent RNA helicase DHX58.
    
  0.707
ROHU_036149
Interferon-induced helicase C domain-containing 1.
    
  0.707
ROHU_004757
Zinc-binding A33-like isoform X1.
  
  
  0.605
ROHU_030741
Tripartite motif-containing 16-like protein.
  
  
  0.563
ROHU_022203
Zinc-binding A33-like isoform X2.
  
  
 
0.527
ROHU_025656
GTPase IMAP family member 7-like protein.
  
  
 
0.471
ROHU_013433
Ubiquitin-40S ribosomal S27a.
    
  0.461
ROHU_022504
Ubiquitin-40S ribosomal S27a.
    
  0.461
ROHU_036896
Growth arrest-specific 7-like isoform X1.
    
  0.445
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.