Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_033538Homeobox otx5-like protein. (281 aa)    
Predicted Functional Partners:
ROHU_030869
MyoD family inhibitor-like isoform X1.
    
   0.809
ROHU_014033
Photoreceptor-specific nuclear receptor.
   
 
 0.754
ROHU_005953
Nuclear receptor subfamily 1 group D member 1-like protein.
    
 
 0.712
ROHU_016629
Retinoic acid receptor gamma-like isoform X1.
    
 
 0.615
ROHU_001610
Retinoic acid receptor gamma-like isoform X1.
    
 
 0.615
ROHU_029406
Rhodopsin.
   
  
 0.614
ROHU_013075
Rhodopsin.
   
  
 0.594
ROHU_031149
Nuclear receptor subfamily 1 group D member 1-like protein.
    
 
 0.531
ROHU_006146
Methylmalonic aciduria type A mitochondrial.
      
 0.511
ROHU_012674
Retinoic acid receptor alpha isoform X2.
    
 
 0.485
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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