ROHU_034081 protein (Labeo rohita) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ROHU_034081

Beta-1,3-glucosyltransferase-like protein. (426 aa)

Predicted Functional Partners:

ROHU_026065

0.901

ROHU_034078

0.693

ROHU_014669

0.693

ROHU_023838

0.666

ROHU_023839

0.666

ROHU_033899

0.625

ROHU_004644

0.622

ROHU_013702

0.601

ROHU_031552

0.601

ROHU_023825

0.601

Your Current Organism:

Labeo rohita

NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ROHU_004644	ROHU_013702	A0A498NKH8	A0A498L3R2	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Propionyl-carboxylase alpha mitochondrial.	0.828
ROHU_004644	ROHU_023825	A0A498NKH8	A0A498MLT3	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	DNA-directed RNA polymerase II subunit RPB3.	0.994
ROHU_004644	ROHU_026065	A0A498NKH8	A0A498MHB0	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Relaxin receptor 2.	0.622
ROHU_004644	ROHU_031552	A0A498NKH8	A0A498LKV2	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Negative elongation factor C D isoform X1.	0.990
ROHU_004644	ROHU_034081	A0A498NKH8	A0A498LAB7	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Beta-1,3-glucosyltransferase-like protein.	0.622
ROHU_013702	ROHU_004644	A0A498L3R2	A0A498NKH8	Propionyl-carboxylase alpha mitochondrial.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.828
ROHU_013702	ROHU_023825	A0A498L3R2	A0A498MLT3	Propionyl-carboxylase alpha mitochondrial.	DNA-directed RNA polymerase II subunit RPB3.	0.574
ROHU_013702	ROHU_026065	A0A498L3R2	A0A498MHB0	Propionyl-carboxylase alpha mitochondrial.	Relaxin receptor 2.	0.601
ROHU_013702	ROHU_034081	A0A498L3R2	A0A498LAB7	Propionyl-carboxylase alpha mitochondrial.	Beta-1,3-glucosyltransferase-like protein.	0.601
ROHU_014669	ROHU_034081	A0A498NSJ8	A0A498LAB7	Furry-like protein.	Beta-1,3-glucosyltransferase-like protein.	0.693
ROHU_023825	ROHU_004644	A0A498MLT3	A0A498NKH8	DNA-directed RNA polymerase II subunit RPB3.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.994
ROHU_023825	ROHU_013702	A0A498MLT3	A0A498L3R2	DNA-directed RNA polymerase II subunit RPB3.	Propionyl-carboxylase alpha mitochondrial.	0.574
ROHU_023825	ROHU_026065	A0A498MLT3	A0A498MHB0	DNA-directed RNA polymerase II subunit RPB3.	Relaxin receptor 2.	0.601
ROHU_023825	ROHU_031552	A0A498MLT3	A0A498LKV2	DNA-directed RNA polymerase II subunit RPB3.	Negative elongation factor C D isoform X1.	0.758
ROHU_023825	ROHU_034081	A0A498MLT3	A0A498LAB7	DNA-directed RNA polymerase II subunit RPB3.	Beta-1,3-glucosyltransferase-like protein.	0.601
ROHU_023838	ROHU_023839	A0A498MRJ0	A0A498MZ54	Spondin-1-like isoform X2.	Spondin-1-like isoform X1.	0.900
ROHU_023838	ROHU_026065	A0A498MRJ0	A0A498MHB0	Spondin-1-like isoform X2.	Relaxin receptor 2.	0.666
ROHU_023838	ROHU_034081	A0A498MRJ0	A0A498LAB7	Spondin-1-like isoform X2.	Beta-1,3-glucosyltransferase-like protein.	0.666
ROHU_023839	ROHU_023838	A0A498MZ54	A0A498MRJ0	Spondin-1-like isoform X1.	Spondin-1-like isoform X2.	0.900
ROHU_023839	ROHU_026065	A0A498MZ54	A0A498MHB0	Spondin-1-like isoform X1.	Relaxin receptor 2.	0.666