STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_034801tRNA pseudouridine(38 39) synthase-like isoform X1. (899 aa)    
Predicted Functional Partners:
ROHU_013241
Putative tRNA pseudouridine synthase 2.
  
 0.858
ROHU_024564
tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
   
 
 0.759
ROHU_023825
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.739
ROHU_022808
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.739
ROHU_020434
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
  
 
 0.663
METTL1
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.660
ROHU_025626
Pseudouridylate synthase 7-like protein.
   
 
 0.650
ROHU_024381
Nucleolar 6.
   
   0.650
ROHU_003044
Pseudouridylate synthase 7-like protein.
   
 
 0.650
ROHU_012426
Ribosome production factor 2-like protein.
   
    0.637
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.