STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_013044Transcription initiation factor TFIID subunit 3. (179 aa)    
Predicted Functional Partners:
ROHU_003852
Transcription initiation factor TFIID subunit 11.
   
 0.975
ROHU_018491
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.972
ROHU_023513
Transcription initiation factor TFIID subunit 13.
    
 0.961
ROHU_012847
Transcription initiation factor TFIID subunit 12.
    
 0.959
ROHU_005298
Transcription initiation factor TFIID subunit.
    
 0.956
ROHU_010455
Transcription initiation factor TFIID subunit 2.
    
 0.954
ROHU_005529
Aryl-hydrocarbon-interacting-like 1.
    
 0.953
ROHU_028654
Transcription initiation factor TFIID subunit 9-like protein.
    
 0.924
ROHU_011966
Sperm-associated antigen 16.
    
 0.918
ROHU_011197
TAF5-like RNA polymerase II p300 CBP-associated factor-associated factor 65 kDa subunit 5L.
    
 0.918
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.