STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_012110PAX3-and PAX7-binding 1. (862 aa)    
Predicted Functional Partners:
ROHU_020983
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 0.865
ROHU_024862
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
 0.820
ROHU_011055
Pre-mRNA-splicing factor syf2.
    
  0.755
ROHU_035958
Pre-mRNA-processing factor 17.
     
 0.710
ROHU_011445
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32.
    
 0.707
ROHU_030272
ATP-dependent RNA helicase DQX1.
    
 0.707
ROHU_029067
ATP-dependent RNA helicase DQX1.
    
 0.707
ROHU_024774
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32.
    
 0.707
ROHU_011879
Pre-mRNA-processing-splicing factor 8.
    
   0.699
ROHU_013227
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.691
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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