STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_012229Uncharacterized protein. (455 aa)    
Predicted Functional Partners:
ROHU_002206
Uncharacterized protein.
    
  0.728
ROHU_009145
Rhomboid-related 3-like protein; Belongs to the peptidase S54 family.
    
  0.596
ROHU_028072
Rhomboid-related 3 isoform X3.
    
  0.596
ROHU_028073
Rhomboid-related 3-like protein.
    
  0.596
ROHU_009146
Rhomboid-related 3 isoform X1.
    
  0.596
ROHU_036140
WD repeat-containing 18.
   
 0.584
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.561
ROHU_027454
Centromere Q isoform X1.
    
  0.495
ROHU_013683
Transcription factor LBX1-like protein.
    
  0.492
ROHU_018415
Centromere M.
    
  0.492
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.