STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_033859Sorting nexin-11-like isoform X1. (444 aa)    
Predicted Functional Partners:
ROHU_027034
Vacuolar sorting-associated 35.
   
 0.940
ROHU_036794
Sorting nexin-15-like protein.
     
 0.885
ROHU_032063
Vacuolar sorting-associated 26B-like protein.
    
 0.867
ROHU_019929
Vacuolar sorting-associated 26B-like protein.
    
 0.867
ROHU_005152
Vacuolar sorting-associated 26B-like protein.
    
 0.867
ROHU_009253
Ribosomal S6 kinase delta-1.
     
 0.848
ROHU_000090
Sorting nexin-15-like protein.
     
 0.848
ROHU_016225
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.812
ROHU_028432
Wntless-like protein.
    
 0.708
ROHU_003541
Wntless-like protein.
    
 0.708
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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