STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_031019Voltage-gated potassium channel subunit beta-1-like protein. (96 aa)    
Predicted Functional Partners:
ROHU_030311
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.807
ROHU_026490
SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.775
ROHU_030667
Potassium voltage-gated channel subfamily F member 1-like protein; Belongs to the potassium channel family.
    
 0.723
ROHU_028989
Potassium voltage-gated channel subfamily V member 1; Belongs to the potassium channel family.
    
 0.718
ROHU_011616
Potassium voltage-gated channel subfamily G member 1; Belongs to the potassium channel family.
    
 0.704
ROHU_011196
Nuclear pore complex protein Nup133.
   
 0.699
ROHU_000205
Nuclear pore complex protein Nup133.
   
 0.699
ROHU_026735
Potassium voltage-gated channel subfamily G member 4-like protein; Belongs to the potassium channel family.
    
 0.697
ROHU_022054
Potassium voltage-gated channel subfamily G member 4; Belongs to the potassium channel family.
    
 0.697
ROHU_021870
Potassium voltage-gated channel subfamily S member 2-like protein; Belongs to the potassium channel family.
    
 0.692
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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