STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_031372Endoplasmic reticulum-Golgi intermediate compartment 2. (224 aa)    
Predicted Functional Partners:
ROHU_020118
Endoplasmic reticulum-Golgi intermediate compartment 3 isoform X1.
   
 
0.971
ROHU_035086
tRNA modification GTPase mitochondrial isoform X1.
  
 0.938
ROHU_016552
tRNA modification GTPase mitochondrial isoform X1; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.938
ROHU_025045
Mitochondrial tRNA-specific 2-thiouridylase 1.
  
 0.787
ROHU_007219
GTSE1_N domain-containing protein.
  
 0.787
ROHU_020617
Sel-1-like protein.
  
 
 0.735
ROHU_013630
Sel-1-like protein.
  
   0.732
ROHU_024675
Sel-1-like protein.
  
   0.732
ROHU_032188
Sel-1-like protein.
  
   0.732
ROHU_024034
Mitochondrial inner membrane OXA1L-like protein.
  
  
 0.634
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.