ROHU_029041 protein (Labeo rohita) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ROHU_029041

Rap guanine nucleotide exchange factor 5-like protein. (204 aa)

Predicted Functional Partners:

ROHU_013547

0.888

ROHU_013544

0.886

ROHU_013545

0.886

ROHU_015289

0.886

ROHU_015290

0.886

ROHU_015288

0.886

ROHU_002012

0.886

ROHU_024324

0.813

ROHU_015429

0.802

ROHU_011165

0.698

Your Current Organism:

Labeo rohita

NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ROHU_002012	ROHU_013544	A0A498NZ03	A0A498L9Y4	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.743
ROHU_002012	ROHU_013545	A0A498NZ03	A0A498LD74	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.738
ROHU_002012	ROHU_013547	A0A498NZ03	A0A498LBS9	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2 isoform X3.	0.875
ROHU_002012	ROHU_015288	A0A498NZ03	A0A498NQ73	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.743
ROHU_002012	ROHU_015289	A0A498NZ03	A0A498NP76	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2 isoform X14.	0.736
ROHU_002012	ROHU_015290	A0A498NZ03	A0A498NPV3	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like isoform X3.	0.849
ROHU_002012	ROHU_029041	A0A498NZ03	A0A498M144	Regulating synaptic membrane exocytosis 2-like protein.	Rap guanine nucleotide exchange factor 5-like protein.	0.886
ROHU_011165	ROHU_015429	A0A498LRH4	A0A498NPH6	Ras-related M-Ras-like protein.	Ras-related R-Ras-like protein.	0.785
ROHU_011165	ROHU_029041	A0A498LRH4	A0A498M144	Ras-related M-Ras-like protein.	Rap guanine nucleotide exchange factor 5-like protein.	0.698
ROHU_013544	ROHU_002012	A0A498L9Y4	A0A498NZ03	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.743
ROHU_013544	ROHU_013545	A0A498L9Y4	A0A498LD74	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.783
ROHU_013544	ROHU_013547	A0A498L9Y4	A0A498LBS9	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2 isoform X3.	0.736
ROHU_013544	ROHU_015288	A0A498L9Y4	A0A498NQ73	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.736
ROHU_013544	ROHU_015289	A0A498L9Y4	A0A498NP76	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2 isoform X14.	0.736
ROHU_013544	ROHU_015290	A0A498L9Y4	A0A498NPV3	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like isoform X3.	0.736
ROHU_013544	ROHU_029041	A0A498L9Y4	A0A498M144	Regulating synaptic membrane exocytosis 2-like protein.	Rap guanine nucleotide exchange factor 5-like protein.	0.886
ROHU_013545	ROHU_002012	A0A498LD74	A0A498NZ03	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.738
ROHU_013545	ROHU_013544	A0A498LD74	A0A498L9Y4	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.783
ROHU_013545	ROHU_013547	A0A498LD74	A0A498LBS9	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2 isoform X3.	0.896
ROHU_013545	ROHU_015288	A0A498LD74	A0A498NQ73	Regulating synaptic membrane exocytosis 2-like protein.	Regulating synaptic membrane exocytosis 2-like protein.	0.740