STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_026899Rab3 GTPase-activating catalytic subunit-like protein. (248 aa)    
Predicted Functional Partners:
ROHU_018118
Rab3 GTPase-activating non-catalytic subunit-like isoform X1.
   
 0.986
ROHU_008020
Reverse transcriptase SR3.
   
 0.964
ROHU_026898
Rab3 GTPase-activating catalytic subunit.
 
     0.937
ROHU_026900
Rab3 GTPase-activating catalytic subunit isoform X2.
 
     0.932
ROHU_002124
Ras-related Rab-18.
    
 0.753
ROHU_030112
Ras-related Rab-18.
    
 0.741
ROHU_029531
Dynactin subunit 4 isoform X2.
   
 
  0.672
ROHU_025757
Ras-related Rab-6B isoform X2.
     
 0.665
ROHU_002990
Ras-related Rab-34-like isoform X1.
     
 0.655
ROHU_015853
Dynactin subunit 5.
   
 
  0.651
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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