STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_026799Splicing regulatory glutamine lysine-rich 1 isoform X5. (337 aa)    
Predicted Functional Partners:
ROHU_006395
Serine arginine-rich splicing factor 3 isoform X1.
   
 0.883
ROHU_023119
Serine arginine-rich splicing factor 7 isoform X3.
   
 0.855
ROHU_007050
Serine arginine-rich splicing factor 9-like protein.
   
 0.836
ROHU_014172
RNA-binding with serine-rich domain 1.
   
 0.830
ROHU_012283
Serine arginine-rich splicing factor 2-like protein.
   
 0.827
ROHU_031401
Serine arginine-rich splicing factor 2-like protein.
   
 0.827
ROHU_020889
Polyadenylate-binding 2 isoform X1.
   
 0.822
ROHU_036304
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.793
ROHU_011679
Zinc finger Ran-binding domain-containing 2-like isoform X2.
   
 0.786
ROHU_020823
Transformer-2-like protein.
   
 0.786
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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