STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_027581Transcription factor IIIB 90 kDa subunit-like protein. (475 aa)    
Predicted Functional Partners:
ROHU_020153
TATA box-binding 2.
   
 0.978
ROHU_013732
General transcription factor 3C polypeptide 3 isoform X1.
    
 0.973
ROHU_023440
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
    
 0.965
ROHU_011483
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.952
ROHU_022808
DNA-directed RNA polymerases I and III subunit RPAC1.
    
 0.929
ROHU_030652
Transcription factor IIIB 90 kDa subunit-like protein.
 
   
  0.927
ROHU_018975
DNA-directed RNA polymerase III subunit RPC4.
    
 0.922
ROHU_026458
DNA-directed RNA polymerase III subunit RPC2; Belongs to the RNA polymerase beta chain family.
   
 0.916
ROHU_026459
DNA-directed RNA polymerase III subunit.
   
 0.916
ROHU_017137
DNA-directed RNA polymerase III subunit RPC5.
    
 0.915
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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