STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_007700Forkhead box N3-like protein. (1631 aa)    
Predicted Functional Partners:
ROHU_020153
TATA box-binding 2.
   
 0.975
ROHU_024572
General transcription factor IIF subunit 2-like protein.
   
 0.957
ROHU_021473
Transcription initiation factor IIE subunit beta.
    
 0.955
ROHU_016449
General transcription factor IIH subunit.
    
 0.952
ROHU_025124
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.949
ROHU_003292
TFIIH basal transcription factor complex helicase XPB subunit.
    
 0.942
ROHU_031628
Transcription initiation factor IIB.
   
 0.937
ROHU_007302
Transcription initiation factor IIB.
   
 0.937
ROHU_026857
CDK-activating kinase assembly factor MAT1.
    
 0.933
ROHU_023825
DNA-directed RNA polymerase II subunit RPB3.
   
  0.931
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.