STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_017585FRG1. (216 aa)    
Predicted Functional Partners:
ROHU_011879
Pre-mRNA-processing-splicing factor 8.
    
 
 0.907
ROHU_035958
Pre-mRNA-processing factor 17.
    
   0.824
ROHU_024023
Small nuclear ribonucleo F.
    
 
 0.807
ROHU_006506
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.778
ROHU_037237
116 kDa U5 small nuclear ribonucleo component.
    
   0.777
ROHU_013227
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.771
ROHU_018128
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
    
   0.771
ROHU_024267
Peptidylprolyl isomerase domain and WD repeat-containing 1.
    
 
 0.769
ROHU_029385
Small nuclear ribonucleoprotein Sm D3.
    
 
 0.768
ROHU_026239
U5 small nuclear ribonucleo protein 200 kDa helicase.
    
   0.765
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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