STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_023751Intraflagellar transport protein 122-like. (979 aa)    
Predicted Functional Partners:
ROHU_035675
WD repeat-containing 19 isoform X2; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
 0.983
ROHU_021108
Intraflagellar transport 43-like protein.
    
 0.964
ROHU_030674
WD repeat-containing 35 isoform X1.
  
 0.955
ROHU_023176
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
  
 0.944
ROHU_000296
WD repeat-containing 35 isoform X1.
  
0.943
ROHU_006905
Intraflagellar transport protein 140-like.
  
 0.935
ROHU_002349
Tetratricopeptide repeat 21B.
   
 0.932
ROHU_035467
Intraflagellar transport protein 140-like.
   
 0.907
ROHU_006903
Intraflagellar transport protein 140-like.
   
 0.907
ROHU_028477
Tetratricopeptide repeat 21A isoform X1.
  
 0.884
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.