STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_019312Signal recognition particle subunit SRP72-like protein. (516 aa)    
Predicted Functional Partners:
ROHU_027849
Signal recognition particle subunit SRP68.
   
 0.995
ROHU_009950
Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.
    
 0.990
SRP54
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
 0.990
ROHU_019229
Signal recognition particle 19 kDa.
    
 0.990
ROHU_028696
Signal recognition particle receptor subunit beta.
    
 
 0.903
ROHU_007020
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
  0.859
ROHU_036962
60S ribosomal L4.
    
  0.856
ROHU_015748
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
    
 0.853
ROHU_020791
60S ribosomal L14.
    
 0.851
ROHU_002989
60S ribosomal L23a; Belongs to the universal ribosomal protein uL23 family.
    
 0.849
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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