ROHU_020469 protein (Labeo rohita) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ROHU_020469

S-phase kinase-associated 2-like isoform X2. (1190 aa)

Predicted Functional Partners:

ROHU_012868

0.999

ROHU_028106

0.980

ROHU_024913

0.980

ROHU_015985

0.978

ROHU_002886

0.978

ROHU_024121

0.964

ROHU_031571

0.952

ROHU_025666

0.927

ROHU_005842

0.927

ROHU_026746

0.923

Your Current Organism:

Labeo rohita

NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ROHU_002886	ROHU_005842	A0A498NYN6	A0A498N9E2	E3 ubiquitin-ligase RBX1.	F-box WD repeat-containing 11-like isoform X2.	0.974
ROHU_002886	ROHU_012868	A0A498NYN6	A0A498NE74	E3 ubiquitin-ligase RBX1.	S-phase kinase-associated 1; Belongs to the SKP1 family.	0.995
ROHU_002886	ROHU_020469	A0A498NYN6	A0A498N8U1	E3 ubiquitin-ligase RBX1.	S-phase kinase-associated 2-like isoform X2.	0.978
ROHU_002886	ROHU_024121	A0A498NYN6	A0A498MPI0	E3 ubiquitin-ligase RBX1.	NEDD8-like protein.	0.986
ROHU_002886	ROHU_024913	A0A498NYN6	A0A498MH35	E3 ubiquitin-ligase RBX1.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.897
ROHU_002886	ROHU_025666	A0A498NYN6	A0A498MJF9	E3 ubiquitin-ligase RBX1.	F-box WD repeat-containing 11-like protein.	0.974
ROHU_002886	ROHU_026746	A0A498NYN6	A0A498M9H5	E3 ubiquitin-ligase RBX1.	DNA replication factor Cdt1-like protein.	0.500
ROHU_002886	ROHU_028106	A0A498NYN6	A0A498MEK5	E3 ubiquitin-ligase RBX1.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.897
ROHU_002886	ROHU_031571	A0A498NYN6	A0A498LLT9	E3 ubiquitin-ligase RBX1.	Ubiquitin fusion degradation 1-like protein.	0.811
ROHU_005842	ROHU_002886	A0A498N9E2	A0A498NYN6	F-box WD repeat-containing 11-like isoform X2.	E3 ubiquitin-ligase RBX1.	0.974
ROHU_005842	ROHU_012868	A0A498N9E2	A0A498NE74	F-box WD repeat-containing 11-like isoform X2.	S-phase kinase-associated 1; Belongs to the SKP1 family.	0.994
ROHU_005842	ROHU_015985	A0A498N9E2	A0A498NM20	F-box WD repeat-containing 11-like isoform X2.	Chondroadherin.	0.963
ROHU_005842	ROHU_020469	A0A498N9E2	A0A498N8U1	F-box WD repeat-containing 11-like isoform X2.	S-phase kinase-associated 2-like isoform X2.	0.927
ROHU_005842	ROHU_024121	A0A498N9E2	A0A498MPI0	F-box WD repeat-containing 11-like isoform X2.	NEDD8-like protein.	0.927
ROHU_005842	ROHU_025666	A0A498N9E2	A0A498MJF9	F-box WD repeat-containing 11-like isoform X2.	F-box WD repeat-containing 11-like protein.	0.839
ROHU_012868	ROHU_002886	A0A498NE74	A0A498NYN6	S-phase kinase-associated 1; Belongs to the SKP1 family.	E3 ubiquitin-ligase RBX1.	0.995
ROHU_012868	ROHU_005842	A0A498NE74	A0A498N9E2	S-phase kinase-associated 1; Belongs to the SKP1 family.	F-box WD repeat-containing 11-like isoform X2.	0.994
ROHU_012868	ROHU_015985	A0A498NE74	A0A498NM20	S-phase kinase-associated 1; Belongs to the SKP1 family.	Chondroadherin.	0.994
ROHU_012868	ROHU_020469	A0A498NE74	A0A498N8U1	S-phase kinase-associated 1; Belongs to the SKP1 family.	S-phase kinase-associated 2-like isoform X2.	0.999
ROHU_012868	ROHU_024121	A0A498NE74	A0A498MPI0	S-phase kinase-associated 1; Belongs to the SKP1 family.	NEDD8-like protein.	0.991