STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_005278Ankyrin repeat family A 2-like protein. (160 aa)    
Predicted Functional Partners:
ROHU_004556
Regulatory factor X-associated.
    
 0.955
ROHU_009743
DNA-binding RFX7-like isoform X1.
    
 
 0.907
ROHU_005279
Ankyrin repeat family A 2-like protein.
 
      0.900
ROHU_028096
DNA-binding RFX5-like protein.
    
 0.793
ROHU_011191
MHC class II regulatory factor RFX1-like protein.
    
 0.776
ROHU_010293
Transcription factor RFX3 isoform X2.
    
 0.776
ROHU_026460
Transcription factor RFX4 isoform X3.
    
 0.776
ROHU_023060
DNA-binding RFX6.
    
 0.776
ROHU_014862
DNA-binding RFX2 isoform X1.
    
 0.776
ROHU_018381
Methionine--tRNA cytoplasmic isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.629
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.