STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_004989Testis-expressed sequence 10. (359 aa)    
Predicted Functional Partners:
ROHU_036140
WD repeat-containing 18.
   
 0.966
ROHU_012863
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
 0.947
ROHU_004988
Testis-expressed sequence 10-like protein.
 
      0.897
ROHU_018140
Zinc finger protein 593.
   
 
 0.838
ROHU_036808
Proline-glutamic acid-and leucine-rich 1-like protein.
   
 0.837
ROHU_003406
Proline-glutamic acid-and leucine-rich 1-like protein.
   
 0.837
ROHU_035974
Solute carrier organic anion transporter family member 5A1-like protein.
   
 
 0.833
ROHU_025400
Guanine nucleotide-binding-like 3.
   
 0.828
ROHU_000009
Guanine nucleotide-binding-like 3.
   
 0.828
ROHU_000026
Guanine nucleotide-binding-like 3.
   
 0.828
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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