ROHU_018895 protein (Labeo rohita) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ROHU_018895

GDNF family receptor alpha-4-like protein. (420 aa)

Predicted Functional Partners:

ROHU_007928

0.880

ROHU_021212

0.784

ROHU_016543

0.768

ROHU_022839

0.756

ROHU_002339

0.756

ROHU_029527

0.685

ROHU_007118

0.663

ROHU_023431

0.624

ROHU_031255

0.604

ROHU_030249

0.604

Your Current Organism:

Labeo rohita

NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ROHU_002339	ROHU_007928	A0A498NZK2	A0A498MLY8	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.963
ROHU_002339	ROHU_016543	A0A498NZK2	A0A498NJ94	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Neurturin.	0.955
ROHU_002339	ROHU_018895	A0A498NZK2	A0A498ND85	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	GDNF family receptor alpha-4-like protein.	0.756
ROHU_002339	ROHU_021212	A0A498NZK2	A0A498N9V2	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Artemin-like protein; Belongs to the TGF-beta family.	0.917
ROHU_002339	ROHU_023431	A0A498NZK2	A0A498MRN6	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Persephin-like protein.	0.772
ROHU_002339	ROHU_029527	A0A498NZK2	A0A498LVP9	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Platelet-derived growth factor receptor.	0.527
ROHU_007118	ROHU_007928	A0A498MGH0	A0A498MLY8	Fibroblast growth factor receptor-like 1.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.646
ROHU_007118	ROHU_016543	A0A498MGH0	A0A498NJ94	Fibroblast growth factor receptor-like 1.	Neurturin.	0.665
ROHU_007118	ROHU_018895	A0A498MGH0	A0A498ND85	Fibroblast growth factor receptor-like 1.	GDNF family receptor alpha-4-like protein.	0.663
ROHU_007118	ROHU_021212	A0A498MGH0	A0A498N9V2	Fibroblast growth factor receptor-like 1.	Artemin-like protein; Belongs to the TGF-beta family.	0.462
ROHU_007118	ROHU_023431	A0A498MGH0	A0A498MRN6	Fibroblast growth factor receptor-like 1.	Persephin-like protein.	0.402
ROHU_007118	ROHU_029527	A0A498MGH0	A0A498LVP9	Fibroblast growth factor receptor-like 1.	Platelet-derived growth factor receptor.	0.579
ROHU_007928	ROHU_002339	A0A498MLY8	A0A498NZK2	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.963
ROHU_007928	ROHU_007118	A0A498MLY8	A0A498MGH0	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Fibroblast growth factor receptor-like 1.	0.646
ROHU_007928	ROHU_016543	A0A498MLY8	A0A498NJ94	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Neurturin.	0.738
ROHU_007928	ROHU_018895	A0A498MLY8	A0A498ND85	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	GDNF family receptor alpha-4-like protein.	0.880
ROHU_007928	ROHU_021212	A0A498MLY8	A0A498N9V2	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Artemin-like protein; Belongs to the TGF-beta family.	0.548
ROHU_007928	ROHU_022839	A0A498MLY8	A0A498MUD1	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Proto-oncogene tyrosine-kinase receptor Ret-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.963
ROHU_007928	ROHU_023431	A0A498MLY8	A0A498MRN6	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Persephin-like protein.	0.745
ROHU_007928	ROHU_029527	A0A498MLY8	A0A498LVP9	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Platelet-derived growth factor receptor.	0.519