ROHU_017390 protein (Labeo rohita) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ROHU_017390

Titin-like isoform X1. (252 aa)

Predicted Functional Partners:

ROHU_035470

0.737

ROHU_020508

0.622

ROHU_027456

0.618

ROHU_018652

0.608

ROHU_018655

0.608

ROHU_018402

0.608

ROHU_029580

0.605

ROHU_027679

0.605

ROHU_027680

0.605

ROHU_024955

0.605

Your Current Organism:

Labeo rohita

NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ROHU_017390	ROHU_018402	A0A498NGA9	A0A498NDR7	Titin-like isoform X1.	Peripheral plasma membrane CASK-like protein.	0.608
ROHU_017390	ROHU_018652	A0A498NGA9	A0A498N9F5	Titin-like isoform X1.	Peripheral plasma membrane CASK-like isoform X2.	0.608
ROHU_017390	ROHU_018655	A0A498NGA9	A0A498NCV6	Titin-like isoform X1.	Peripheral plasma membrane CASK isoform X15; Belongs to the MAGUK family.	0.608
ROHU_017390	ROHU_020508	A0A498NGA9	A0A498NCB2	Titin-like isoform X1.	Junctional adhesion molecule C-like isoform X1.	0.622
ROHU_017390	ROHU_024955	A0A498NGA9	A0A498MUR5	Titin-like isoform X1.	Tight junction ZO-3-like isoform X2; Belongs to the MAGUK family.	0.605
ROHU_017390	ROHU_027456	A0A498NGA9	A0A498MGP3	Titin-like isoform X1.	Junctional adhesion molecule B-like isoform X2.	0.618
ROHU_017390	ROHU_027679	A0A498NGA9	A0A498M650	Titin-like isoform X1.	Tight junction ZO-1-like isoform X4.	0.605
ROHU_017390	ROHU_027680	A0A498NGA9	A0A498M9J9	Titin-like isoform X1.	Tight junction ZO-1-like isoform X2; Belongs to the MAGUK family.	0.605
ROHU_017390	ROHU_029580	A0A498NGA9	A0A498LV95	Titin-like isoform X1.	Tight junction ZO-2-like protein.	0.605
ROHU_017390	ROHU_035470	A0A498NGA9	A0A498MP56	Titin-like isoform X1.	Afadin-like isoform X9.	0.737
ROHU_018402	ROHU_017390	A0A498NDR7	A0A498NGA9	Peripheral plasma membrane CASK-like protein.	Titin-like isoform X1.	0.608
ROHU_018402	ROHU_018652	A0A498NDR7	A0A498N9F5	Peripheral plasma membrane CASK-like protein.	Peripheral plasma membrane CASK-like isoform X2.	0.821
ROHU_018402	ROHU_018655	A0A498NDR7	A0A498NCV6	Peripheral plasma membrane CASK-like protein.	Peripheral plasma membrane CASK isoform X15; Belongs to the MAGUK family.	0.981
ROHU_018652	ROHU_017390	A0A498N9F5	A0A498NGA9	Peripheral plasma membrane CASK-like isoform X2.	Titin-like isoform X1.	0.608
ROHU_018652	ROHU_018402	A0A498N9F5	A0A498NDR7	Peripheral plasma membrane CASK-like isoform X2.	Peripheral plasma membrane CASK-like protein.	0.821
ROHU_018652	ROHU_018655	A0A498N9F5	A0A498NCV6	Peripheral plasma membrane CASK-like isoform X2.	Peripheral plasma membrane CASK isoform X15; Belongs to the MAGUK family.	0.961
ROHU_018655	ROHU_017390	A0A498NCV6	A0A498NGA9	Peripheral plasma membrane CASK isoform X15; Belongs to the MAGUK family.	Titin-like isoform X1.	0.608
ROHU_018655	ROHU_018402	A0A498NCV6	A0A498NDR7	Peripheral plasma membrane CASK isoform X15; Belongs to the MAGUK family.	Peripheral plasma membrane CASK-like protein.	0.981
ROHU_018655	ROHU_018652	A0A498NCV6	A0A498N9F5	Peripheral plasma membrane CASK isoform X15; Belongs to the MAGUK family.	Peripheral plasma membrane CASK-like isoform X2.	0.961
ROHU_020508	ROHU_017390	A0A498NCB2	A0A498NGA9	Junctional adhesion molecule C-like isoform X1.	Titin-like isoform X1.	0.622