STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_004361Spectrin beta non-erythrocytic 4 isoform X1. (2582 aa)    
Predicted Functional Partners:
ROHU_029382
Spectrin alpha non-erythrocytic 1 isoform X4.
   
0.878
ROHU_024192
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 0.572
ROHU_016735
Ankyrin-2 isoform X1.
   
 0.567
ROHU_036950
Ankyrin-2-like isoform X11.
   
 0.567
ROHU_026152
Ankyrin-2-like isoform X7.
   
 0.567
ROHU_020433
Ankyrin-1-like isoform X2.
   
 0.567
ROHU_036435
Ankyrin-1-like isoform X2.
   
 0.567
ROHU_017658
Ankyrin-1-like isoform X2.
   
 0.567
ROHU_005226
Ankyrin-3-like isoform X5.
   
 0.567
ROHU_016736
Ankyrin-2-like isoform X2.
   
 0.567
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.