STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_015010Regulation of nuclear pre-mRNA domain-containing 1B-like isoform X1. (297 aa)    
Predicted Functional Partners:
ROHU_036304
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.936
ROHU_035566
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.909
ROHU_010849
Leucine-rich repeat extensin 5.
    
 0.909
ROHU_037158
RNA polymerase II subunit B1 CTD phosphatase RPAP2.
   
 0.891
ROHU_016333
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
    
 
 0.871
ROHU_012291
Decapping and exoribonuclease.
    
 
 0.868
ROHU_023825
DNA-directed RNA polymerase II subunit RPB3.
    
 0.846
ROHU_037088
Regulation of nuclear pre-mRNA domain-containing 2-like protein.
    
0.840
ROHU_027966
DNA-directed RNA polymerase II subunit RPB9.
    
 0.834
ROHU_005924
DNA-directed RNA polymerases and III subunit RPABC5.
    
  0.757
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.