STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_014499UPF0602 C4orf47-like protein. (303 aa)    
Predicted Functional Partners:
ROHU_025131
Uncharacterized protein.
   
  
 0.609
ROHU_020848
EF-hand calcium-binding domain-containing 1.
      
 0.601
ROHU_027005
Coiled-coil domain-containing 96.
    
 
 0.599
ROHU_035564
Armadillo repeat-containing 4.
   
  
 0.598
ROHU_007461
IQ and ubiquitin-like domain-containing isoform X1.
      
 0.597
ROHU_022904
Uncharacterized protein.
   
  
 0.596
ROHU_016948
Enkurin domain-containing 1 isoform X1.
      
 0.552
ROHU_003091
Verrucotoxin subunit beta-like protein.
    
  0.532
ROHU_023910
Inactive tyrosine-kinase 7-like protein.
    
  0.531
ROHU_006108
Inactive tyrosine-kinase 7-like protein.
    
  0.531
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.