STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_035941E3 ubiquitin-ligase synoviolin-like protein. (152 aa)    
Predicted Functional Partners:
ROHU_030802
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.990
ROHU_015599
Ubiquitin-conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.965
ROHU_020617
Sel-1-like protein.
   
 0.954
ROHU_033609
Endoplasmic reticulum lectin 1-like isoform X1.
   
 0.949
ROHU_030623
Endoplasmic reticulum lectin 1-like isoform X1.
   
 0.949
ROHU_022936
Polyubiquitin-C.
    
 0.949
ROHU_013630
Sel-1-like protein.
   
 0.916
ROHU_024675
Sel-1-like protein.
   
 0.916
ROHU_032188
Sel-1-like protein.
   
 0.916
ROHU_034099
Transitional endoplasmic reticulum ATPase-like protein; Belongs to the AAA ATPase family.
    
 0.877
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.