STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_003533BRCA1-A complex subunit BRE. (158 aa)    
Predicted Functional Partners:
ROHU_019062
Lys-63-specific deubiquitinase BRCC36.
    
 0.977
ROHU_035088
BRISC and BRCA1-A complex member 1.
    
 0.970
ROHU_016550
BRISC and BRCA1-A complex member 1.
    
 0.970
ROHU_008411
BRCA1-A complex subunit BRE.
 
  
  0.945
ROHU_017053
BRCA1-associated RING domain 1.
   
 0.817
ROHU_013016
Reverse transcriptase.
    
 0.750
ROHU_011960
Reverse transcriptase.
    
 0.750
ROHU_000143
Reverse transcriptase.
    
 0.750
ROHU_010191
Reverse transcriptase.
    
 0.750
ROHU_008023
Reverse transcriptase domain-containing protein.
    
 0.750
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.