STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_014060Nuclear valosin-containing-like isoform X1; Belongs to the AAA ATPase family. (700 aa)    
Predicted Functional Partners:
ROHU_005450
UBX domain-containing protein 7.
   
 0.972
ROHU_012831
Putative ATP-dependent RNA helicase DDX56.
   
 
 0.933
ROHU_027015
Nucleolar MIF4G domain-containing 1.
   
    0.932
ROHU_027827
Superkiller viralicidic activity 2-like 2.
   
 0.931
ROHU_027829
Superkiller viralicidic activity 2-like 2.
   
 0.931
ROHU_037279
TBC1 domain family member 12-like isoform X2.
   
  
 0.925
ROHU_022103
F-box LRR-repeat 13.
    
 0.911
ROHU_005565
UBX domain-containing 1.
    
 0.911
ROHU_031300
Fanconi anemia core complex-associated protein 100-like.
    
 0.910
ROHU_030956
Nuclear localization 4-like protein.
    
 0.910
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.