STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROHU_013905Cadherin-2-like protein; Cadherins are calcium-dependent cell adhesion proteins. (151 aa)    
Predicted Functional Partners:
ROHU_035554
Catenin beta-1 isoform X2.
   
 0.728
ROHU_020797
Catenin beta-1.
   
 0.728
ROHU_022146
Junction plakoglobin-like protein.
    
 0.720
ROHU_025344
Catenin delta-1-like isoform X1.
    
 0.678
ROHU_002444
Catenin delta-1-like isoform X3.
    
 0.678
ROHU_016446
Armadillo repeat deleted in velo-cardio-facial syndrome-like protein.
    
 0.677
ROHU_020939
Four-jointed box 1-like protein.
   
 0.620
ROHU_001468
Four-jointed box 1-like protein.
   
 0.620
ROHU_035683
Protocadherin Fat 1-like protein.
   
  0.600
ROHU_036518
Protocadherin Fat 1-like protein.
   
  0.600
Your Current Organism:
Labeo rohita
NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.