STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIB3Calcium and integrin-binding family member 3. (156 aa)    
Predicted Functional Partners:
UY3_12435
Transmembrane channel-like protein 2.
    
 0.806
UY3_13750
Transmembrane channel-like protein.
    
 0.806
CASK
Peripheral plasma membrane protein CASK.
    
 0.728
UBE2V2
Ubiquitin-conjugating enzyme E2 variant 2.
     
 0.670
NEDD9
Enhancer of filamentation 1.
   
 0.641
TRIP13
Pachytene checkpoint protein 2 like protein; Belongs to the AAA ATPase family.
    
 0.635
UY3_06995
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.615
LUM
Lumican.
    
 0.604
SPICE1
Spindle and centriole-associated protein 1.
      
 0.604
UY3_13854
Rho guanine nucleotide exchange factor 12.
      
 0.578
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.