STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMAT5Zinc finger matrin-type protein 5. (167 aa)    
Predicted Functional Partners:
UY3_15847
Small nuclear ribonucleoprotein Sm D2.
   
 0.986
UY3_14609
Small nuclear ribonucleoprotein-associated protein N.
   
 0.982
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.978
SF3B1
Splicing factor 3B subunit 1.
   
 0.974
LSM10
U7 snRNA-associated Sm-like protein LSm10.
   
 0.974
RNPC3
RNA-binding protein 40.
   
 0.966
SF3B2
Splicing factor 3B subunit 2.
   
 0.962
SF3B3
Splicing factor 3B subunit 3.
   
 0.955
UY3_11864
Leucine-rich repeat-containing protein C10orf11 like protein.
   
 
 0.953
SF3B5
Splicing factor 3B subunit 5.
   
 0.951
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.